Concept

Parameter choice — where it appears

A number somebody typed into a source file that decides an algorithm's behaviour and appears in nobody's complexity analysis. It appears in nobody's complexity analysis and decides real behaviour, which is why sweeping one is the only way to report it honestly.

Named by 24 essays across 9 fields — each of them below, with the objects they name alongside it.

share of nodespredictedlevel 149.68% · 50.00%level 225.29% · 25.00%level 312.52% · 12.50%level 46.24% · 6.25%level 53.08% · 3.13%level 61.64% · 1.56%level 70.79% · 0.78%level 80.34% · 0.39%20,000 nodes, p = 0.5, seed 5150worst departure 0.32 points

The height is a distribution, and the coin is a parameter

A skip list over 2,048 keys is described as being about log₂ n levels tall. Across two hundred builds of exactly those keys its height ranged from 9 to 19. The number in the description is the mean of something, and choosing the coin is choosing which something.

randomness · Randomness
1010010B (elements per block)block transfers per searchtuned for B = 64Sorted arrayB-tree tuned for B = 64van Emde Boas — told nothingM = 16,384, B as drawnone layout, 7 block sizes, no parameter

The layout that is told nothing

A B-tree is built around a block size somebody looked up. The van Emde Boas layout is given neither the block size nor the memory size, and across seven block sizes spanning a factor of 64 it tracks the best structure that was told them. An algorithm with no parameters making a claim at every level of the hierarchy at once is a strange thing to be able to measure, and this is what it costs.

applied · Transfer
0%25%50%75%100%11.522.533.545what a matching character is worthreported as the shared region, of the longer sequencea random pair scores zero hereunit cost, alphabet acgtthe region found: 13 characters at the left, 34 at the right

The zero that moves the answer out of the corner

One extra term in the recurrence — a floor at zero — and the answer stops being in the last cell. It becomes a maximum over all 1,040 of them, the traceback's starting point is a search, and the whole mode is meaningless unless a randomly matched pair of characters scores negative on average. That last condition is on the scoring scheme, not on the sequences.

tables · Cost
No estimate543 cells expanded · path 58Straight-line estimate325 cells expanded · path 58Estimate doubled71 cells expanded · path 64V = 900, E = 895, every edge costs onethe estimate is a function of the vertex, supplied by the caller

The precondition on a function the caller writes

Dijkstra expands 1,582 cells to find a path of 98 across a fifty-square grid. The same loop, with the straight-line distance to the goal added to each key, expands 405 and finds the same 98. The estimate has to be a function the caller supplies, and the guarantee holds only while that function never overestimates — a condition on somebody else's code, not on the graph.

graphs · Graph
1100ε — the exponent the fanout is B toelements written per key33445679ε = 1 — the B-tree ·fanout 256 · 3transfers a queryε = 0.5 · fanout 16 · 5a querythe number above eachpoint is what a querycostsB = 256, M = 16,384 (M/B = 64)131,072 random keys

One dial between two structures

A B-tree writes 226 elements of block for every key stored and a log-structured store writes two. They are presented as rival designs. They are one design at two settings of an exponent that nothing in either description mentions, and every setting between them is available.

applied · Transfer
stay 0.9, 400 pairsacgtacgt0525505225045240stay 0.5, 400 pairsacgtacgt0212202112022120cost of aligning the row letter with the column letterpseudocount 1

The matrix a corpus wrote

A substitution matrix is not a property of an alphabet. Fit one to four hundred pairs of sequences that rarely change and the dearest substitution costs five; fit the same model to four hundred pairs that often change and it costs two. Two hundred test pairs aligned under each matrix give different alignments in 115 cases — and a matrix fitted to eight pairs of the first kind moves 79 of them, from sampling alone.

tables · Cost
11010010³10⁴1010010³rows matching the queryblock transfersn/B rows — where the arithmetic says they meetindex, rows scatteredindex, file in key orderread the whole fileB = 64, M = 4,096 (M/B = 64)plus 3 transfers to descend the index

The index that is not worth reading

An index turns a query over 65,536 rows from 1,024 transfers into four. At a thousand matching rows it costs 654 and still wins; at sixteen thousand it costs 1,027 and has lost. Where it turns is decided by the block size — a number the query does not contain, the schema does not mention, and nobody writing either has seen.

applied · Transfer
10×10³10⁴the key side, as a multiple of memoryblock transfersblock nested looppartitioned hash joinsort–merge joinB = 64, M = 512 (M/B = 8)the other relation: 16,384 rows

Two ways to join, and the ratio that decides

The same join costs 260 transfers one way and 1,040 the other; at eight times the memory the same two costs are 2,880 and 1,280, the other way round. Neither number is a property of how large the tables are. The quantity that decides is how the smaller of them compares to memory, and a rule of thumb phrased in rows is a rule about somebody's machine.

applied · Transfer
123456123456cost to open a gapcost to extend a gapintentionexecution571 settingsinte---ntion---execution3 settingsinte-ntion-execution1 setting-intentionexec-ution1 settingintention against execution, affine costseach colour is one optimal alignment

The parameter plane has few answers

Sweep the cost of opening a gap against the cost of extending one over five hundred and seventy-six settings, and the optimal alignment of intention against execution takes four values — one of them at 571 of the settings. Under a linear model the plane divides into three wedges through the origin, because doubling every cost changes nothing and only the ratio is a parameter. Tuning an aligner is choosing a region, and most of the plane is one.

tables · Cost
0%25%50%75%100%1.5×shareheadroom over the mean occupancyoverflowingstanding idledrifting · 4.0 s window · 100 Hz47% overflow at the mean

Sized for a rate that does not hold still

A four-second window on a stream at a hundred arrivals a second holds four hundred items on average and between 105 and 2,169 when the rate moves. An allocation set at that average overflows at 47 per cent of instants while 35 per cent of it stands empty, which is the same decision failing in both directions at once.

practice · Window
1,00010,00010³10⁴characters of textcomparisons, built and scannedcrossing at n = 32,000both rules, exactlythe 1979 tables2 patterns of 10 · four symbolscrossing n = 32,000

The rule that pays on a long enough text

With two patterns, the cheap tables cost 106 steps and the scan reads 13,084 characters; the exact tables cost 594 and the scan reads 12,306. Below thirty-two thousand characters the cheap tables win the total, above it the extra skipping pays for them, and with thirty-two patterns there is no crossing at all.

practice · Symbol
1,00010,00010⁴bits12481632characters in the collection · copies aboveFM-index, compressedr-indexphrase indexEnglish-like · divergence 0z 156 · r 233

The collection decides which index is small

Three compressed self-indexes over one text of five hundred characters measure 3,511, 7,285 and 10,974 bits. Repeat that text thirty-two times and the same three measure 34,615, 8,892 and 17,047 — the ordering has completely reversed, and nothing about any of the structures changed.

indexes · Repeat
1,00010,00010³10⁴characters of textsteps, precomputation plus scancrossing at 8,000published rulesexact rules2 patterns · four symbolscrossing 8,000 · was 32,000

Where the exact rules pay now

With a construction as cheap as the published one, the exact shift rules pay for themselves past eight thousand characters of text at two patterns, four thousand at four, and never at thirty-two — because by thirty-two patterns the two rules make identical decisions.

practice · Symbol
rounded to whole bitsunroundeda resample, 400 near pairs0.860.9340 pairs at stay 0.90.820.928 pairs at stay 0.90.710.88400 pairs at stay 0.70.680.86400 pairs at stay 0.50.620.790.5: no prediction200 test pairs, 16 directionsdashed: a coin flip

The ties a rounded matrix makes

Measure how far each optimal alignment is from a tie — the smallest change to any one cost that makes another alignment win — and it predicts which alignments a refitted substitution matrix will move. A resample of the same corpus moves 30 of the 63 test alignments that sit on a tie and 3 of the other 137. A matrix fitted to a different divergence moves alignments far from a tie as well, and the prediction weakens to a chance of 0.62. And a third of the alignments were on a tie only because the matrix was rounded to whole bits — fitted without rounding, 15 of 200 are, and every prediction improves.

tables · Cost
alignments on a tiedistinct costs · predictionwhole bits633 of 6 · 0.86half bits793 of 6 · 0.91quarter bits414 of 6 · 0.93a grain of 0.2235 of 6 · 0.89eighth bits156 of 6 · 0.93a grain of 0.05205 of 6 · 0.95unrounded156 of 6 · 0.93200 test pairs, 16 directionsbar: alignments within 0.01 of a tie

The lattice that decides the ties

Rounding a fitted substitution matrix to whole bits puts 63 of 200 alignments on a tie where the exact fit puts 15. Rounding to half bits — a finer grain, and the obvious repair — puts 79. What tracks the ties is not how fine the lattice is but how many of the six fitted costs it keeps apart: whole and half bits both leave three, an eighth of a bit leaves all six, and matches the exact fit exactly.

tables · Cost
11010⁴10⁵worst copy chain, phrases followedbits124816noneno capcap on each pointEnglish-like · 16 copies of 512z 156 to 7,351

What a ceiling costs in phrases

A cap of sixteen costs one phrase of a hundred and fifty-six and halves the worst chain. A cap of four costs six times the phrases. The curve between them is flat at one end and vertical at the other, and the elbow is where a structure should be built.

indexes · Parse
10010³10⁴10⁵10⁶⌊1/2ε⌋ = 50151025501002005001,000tuples, and tuples examinedcompression period, in updatestuples examinedpeak tuplesresident tuplesworst rank errorε = 0.01 · 20,000 arrivalspeak 10× · work 72× · answer 1.21×

The period that is not a promise

Greenwald–Khanna's ε appears twice — once as the rank tolerance the structure promises, and once as ⌊1/2ε⌋, the number of updates between compressions. Unhook the second from the first and sweep it across a thousand-fold range. The tuples held move by 10%, the worst rank error by 21%, the peak by ten times and the housekeeping by seventy.

streaming · Rank
0%25%50%75%100%ln 2mean leaf fillrandom, even splits2,906 leavesrandom, rightmost-split rule2,949 leavesascending, even splits3,971 leavesascending, rightmost-split rule2,048 leavesdescending, even splits4,095 leavesdescending, rightmost-split rule4,095 leavesbulk-loaded from sorted keys2,048 leaves131,072 keys, leaves of 64each bar names its rule

The keys that arrive late

Insert 131,072 keys into a B+-tree in random order and its leaves end up 70.5% full; in ascending order, 51.6%; in descending order, 50.0%. The rule databases use to fix ascending inserts — split a full leaf at its right-hand end — fills them completely, and it does nothing for descending keys. Let one key in a hundred arrive late in an otherwise ascending stream and the rule's leaves fall from 100% to 53.4% full. How much of an index is empty is decided by the order its keys arrived in, and a trickle of disorder undoes the fix.

applied · Transfer
0200400600800cells expanded per query, meanno landmarks897four near the centre423four at random209farthest-first141the corners1268 maps × 150 queriesdots: each map's mean

Where the landmarks stand

Four tables of exact distances, each from a chosen cell, turn a straight-line estimate that barely helps on rough terrain into one that cuts a search by a factor of six. Averaged over 1,200 queries on eight maps, the same four tables expand 126 cells a query when their cells are the map's corners and 423 when they are near its centre. The standard choice, each landmark as far as possible from the ones before, expands 141 and loses to the corners on all eight maps. Moving four landmarks to the right places buys more than doubling their number.

graphs · Graph
125102050100200100observed queries the selection sawcells expanded, meanon fresh querieson the sample it was chosen fromthe cornersfarthest-first8 maps × 150 fresh queriesflat lines read no queries

What the queries know that the map does not

A greedy rule that chooses landmark cells by rerunning a sample of past queries needs two hundred of them to draw level with a rule that reads only the map — and what it finally chooses, on map after map, is the four corners. Give the queries a destination instead of scattering them, and twenty are enough to beat the corners by 29% on eight maps out of eight. A query log is worth reading exactly to the extent that it is not uniform.

graphs · Graph
01002003004005006007008009001000roundloads 1.0×blockedloads 1.0×hashedloads 17.6×worst error over the heaviest keyschaintreesmallest-firstlargest-first32 shards · k = 32 · 40,000 arrivalseven 1.00× · uneven 2.7×

A parameter that waits for another

Four merge fold shapes over thirty-two evenly loaded shards leave errors of 665, 667, 665 and 667 — a fifth of a per cent apart. Give the same four shapes shards whose loads span seventeen-fold and they leave 148, 183, 323 and 403. The parameter did nothing until a second parameter moved, and every measurement that fixed the second one saw nothing.

wrong · Merge
0.010.11errors allowed, kshare of windows proposed01234q = 3q = 4q = 5a shaded dot is a collapsed thresholdm = 24 · n = 4,000 · 6 planted1 collapsed rows

The threshold that reaches zero

At q = 5 and four errors on a twenty-four-character pattern the filter demands zero shared q-grams, proposes all 2,977 windows, and computes 986,266 table cells where filling the whole table would have cost 96,000. The failure is arithmetic and is knowable before a character is read.

wrong · Distance
a text that repeats itself2.96xchain 13 · z 110English-like1.31xchain 10 · z 604four symbols, uniform1.28xchain 10 · z 816periodic, period 171.11xchain 9 · z 1,285phrases under a cap of four, against no cap4,096 characters each2.96x to 1.11x

The cap that binds on one text and not another

A periodic text looks like the one made of chains and pays 1.11 times the phrases for a cap of four. A text that repeats itself pays 2.96. The guess is backwards, and the reason is that depth measures nesting rather than repetition.

wrong · Parse
05e+31e+41.5e+40246bits kept in the low partbits⌊log₂(n/m)⌋ = 2low partshigh vector2,049 marks in 16,385 positions1 bits between the two roundings

The flat bottom of a shallow curve

The low width is chosen as the floor of log of the universe over the count. Rounding it up instead costs one bit on five thousand, because the total is m·w plus n over two to the w and the minimum is where those two are equal.

bounds · Space

Named alongside it

The objects these essays reach for when they reach for this one.

Trade offMeasurementCost modelHonest limitRegimeAlignmentBlock transferExternal-memory modelB-treeEdit distancePreprocessingSubstitution matrix

All concepts