Concept

Bit vector — where it appears

A sequence of bits with a directory over it, answering rank in constant time at an overhead that ranges from 3% to 163% according to two chosen block lengths. Its overhead is decided by two chosen block lengths, and reporting the payload without the directory is how a compressed structure is made to look smaller than it is.

Named by 29 essays across 8 fields — each of them below, with the objects they name alongside it.

a text that repeats itselfH0 4.01 · H3 0.236.291.48an order-1 sourceH0 3.00 · H3 0.895.151.67English-likeH0 3.89 · H3 0.976.162.25four symbols, uniformH0 2.00 · H3 1.994.102.59eight symbols, uniformH0 3.00 · H3 2.835.143.65bits per character of textupper bar: plain bit vectors · lower bar: compressed16,384 characters each · sample rate 64sigma 21, 8, 21, 4, 8

The index that is smaller than the text

The Burrows–Wheeler transform is a permutation, so it changes no symbol frequency and a plain index over it is the same size whether the text has deep structure or none — 6.29 bits a character against 6.16, on texts whose third-order entropies differ fourfold. What the transform changed was the runs, and a structure that charges one bit per bit cannot see a run.

indexes · Index
balanced, bits49,2616.01 b/chHuffman-shaped, bits39,0614.77 b/chranks per access5.003.95entropy = 3.90 bitsEnglish-like, sigma = 22 · upper bar balanced, lower Huffman-shapedH0 = 3.90 bits/symbol

Rank is the only thing it does

Constant time and o(n) extra space — a phrase true of a rank directory costing 163% overhead and reading three words, and equally true of one costing 3% and reading eighteen. Both numbers are decided by two integers somebody typed into a header, and the phrase names neither.

machine · Index
1,00010,00010³bits of select supportpositions inspected, worst casebinary search, no extra bits: 510L=8L=256L=8L=256one position per L onesdense and sparse6,554 ones in 65,536 positions · sub-blocks of 8worst cases, every k

Select is not rank backwards

Rank counts the ones before a position and select finds the position of the k-th one, and only the first has an obvious structure. The constant-time answer costs 1.56 bits per one, is bounded in a unit the machine does not charge for, and on a vector with one bit in fifty it inspects more positions than the binary search it replaced.

machine · Index
phrase table5,148 bitsboundary orders3,744 bitsintersection grid1,696 bitspropagation grid1,544 bitsz = 156 · ⌈log₂ z⌉ = 8 levels16,384 characters · 12,132 bitsgrids 26.7% · 20.8 bits a point

The structure paid for before the first query

The two grids that make a phrase index's search proportional to its answer are 3,240 bits on an 8,892-bit index — twenty-seven per cent of the whole structure, answering nothing on their own, and 38% of them is rank directory rather than payload — the lower-order term of the published bound, measured.

space · Grid
2·0·1·20101206·7·3·25·012012201012102rowsdocumentfirstpattern " was t" · 30 occurrences · 7 documentsA filled row is the first of its document. Reporting one costs a range minimum;reading every row costs one visit per occurrence.English-like · 8 documents30 rows · 7 documents

A list of documents is not a list of occurrences

A pattern occurring 790 times in eight documents has an answer of size eight. Reading every occurrence to find out costs 790 array reads; the question a collection has that a text does not is the one its index does not answer.

indexes · Document
rank among the boundaries, sorted by the text before themsorted by the text after0 in the rectanglepattern "ss is un"split after 40 end with the left half0 begin with the rightEnglish-like · 2 copies of 512z = 156 · 0 crossing

A rectangle over a permutation

Two orderings of one set of boundaries are two permutations, so a phrase index's intersection is a rectangle over a permutation grid — the one point set a wavelet tree stores exactly, at one bit per point per level and no coordinates at all.

structures · Grid
00.2500.5000.750101234567891011level of the wavelet treebits a bitthe parse's grida uniform permutation3,612 points · 12 levels0.997 bits a bit

A bit for every bit

A grid over 3,612 points is 43,344 bits of payload. The smallest any structure can be that distinguishes one permutation of 3,612 things from another is 37,485. There is 16% to play for, and the deferral that asked for a compressed grid assumed there was much more.

space · Grid
024601234567891011level of the wavelet treemean runthe parse's grida uniform permutationbreak-even3,612 points · 12 levels1.23x chance

The runs a permutation does not leave

A run of length L costs 2⌊log₂ L⌋ + 1 bits and replaces L, so coding runs pays above a mean run of six. This grid's mean run is 2.34, chance gives 1.90, and coding its runs makes it 17.8% larger.

structures · Grid
candidates, filtering4,355candidates, grid33rank and select, grid2,471occurrences32one query · same collection · same answer16,384 characters · 32 occurrencescandidates 132x · operations 1.76x

The operations a candidate count leaves out

The grid examines 33 candidates where the scan examines 4,355 — a factor of 132. Counted in the operations each of them performs, the same query is 2,471 against 4,355, and the factor is 1.8.

wrong · Grid
0102030255075100125one sampled position in every …of both halves saved, per cent"about a sixth"the marks alone: 14.0%8,192 characters16.7% at one in 32

A sixth of what, exactly

The saving from a counting-only reverse half is 30.5% at one sampled position in four and 14.0% at one in a hundred and twenty-eight. A number quoted without its sampling rate is a number about a setting somebody chose.

wrong · Distance
2.5033.504block width, bitstable bits a block64128256512four bits eacha bit and four, a line eacha bit and four, end to endcoded, a line eachthree bits eacha bit and three, a line eachmean of four seeds, about two thousand blockslabels at 64-bit blocks

A bit for whether it closed

Almost half of a blocked filter's threshold table says one thing: this block never closed. Store that answer as a bit a block, and a closing value only for the blocks that did, found by counting the ones before it. At 64-bit blocks the prediction was 3.1 bits a block and two cache lines. Packed end to end it lands at 3.15 bits and 2.5 lines; packed a line at a time it reads two lines and counts one word, and costs 3.64 bits, because every line must hold the most closings any line happens to draw. At 512-bit blocks, where three blocks in five close, it saves under a tenth of a bit.

randomness · Randomness
00.500123458shortest run the record keeps, in keyscomparisons a key the pass addsthe pass's own cost, one comparison a key1,024 keys4,096 keys256 keysrandom keys, chains and runs, every answer checkedpass included

The runs too short to drop

A pass between neighbours leaves the two-ended selection sort a record of 674 runs on 1,024 random keys, and the scans after it use them to repay three quarters of the pass. Keeping only runs of three keys or more was predicted to cut the record by two thirds and give back under a tenth of what it repaid. It cuts the record by 63%, and gives back 69%: runs of two keys answer half of everything the record answers, because three quarters of its answers are about two neighbouring positions — the question a scan asks about the key beside the extreme it has just found. The record's cost was never in its short runs. It was in writing each run as three words: every neighbouring pair at two bits a pair is 64 words, a thirty-second of the run list, and keeps all of them.

counting · Count
33.203.403.60blocks in the filter (64-bit blocks, 16 bits a key)table bits a block1,93615,497123,885the mean needsized for the worst linemean + 0 sd, overflowmean + 1 sd, overflowmean + 2 sd, overflowthe line-packed split, four-bit valueswhole lines; two seeds

The worst of more lines

A blocked Bloom filter's threshold table, stored as a bit for whether each block closed and a value for each block that did, packed a fixed number of blocks to a cache line, costs 3.64 bits a block at 64-bit blocks because every line must hold the most closed blocks any line draws. Sizing the line for the mean plus one standard deviation, and moving a line's excess values to a shared overflow, was predicted to cost about 3.25 bits and send under one closed lookup in a hundred to a third line. The lookups behave as predicted: 0.6% read the overflow, 2.003 lines a lookup. The bits land at 3.38, because every line must carry the offset where its moved values begin. What the measurement found instead is that the worst line is a property of how many lines there are: 3.38 bits at two thousand blocks and 3.62 at a hundred and twenty thousand, while the line sized for the usual line costs the same at every size.

randomness · Randomness
keys in each sorted run of the inputreads spent per comparison saved (log scale)1101001,00010,000416642561,024256 keys1,024 keys4,096 keyssolid: two bits a pair · faint: run listreads per comparison saved

What it costs to consult two bits a pair

The two-ended selection sort's record of adjacent order can be kept as two bits a neighbouring pair or as a list of runs, and the page that compared them counted both as free to read. Priced, the bits read 1.09 words a question on 1,024 random keys — under the two predicted — and a binary search of the run list takes 8.8 steps, because the pass leaves 503 runs to search. The run list was predicted to win from runs of sixteen keys; it wins only from runs of 512. Both prices are small and neither is small enough. Asked every question the sort makes, the bits spend 201 word reads for every comparison the record saves on runs of four keys, 764 at 4,096 keys, where a table of compared pairs broke even at three. The record repays its reading only on long runs, and the pass that finds them is also the cheapest place to decide whether to consult at all.

counting · Count
level 0 · left335 keptlevel 1 · right+207 smallerlevel 2 · left61 keptlevel 3 · right+33 smallerlevel 4 · left8 keptpositions still in play, and the half the code leaves behindsmaller symbols before position 400: 240rank of "m": 8 — from the same 5 operationsσ 21 · code 010105 ranks, not 105

Every child at once

A bidirectional extension counts the occurrences of every symbol smaller than the one being added, and this collection did it with one rank per symbol — 139.7 operations an extension on a twenty-six-letter alphabet. One walk down the tree gives the same number.

indexes · Symbol
3.203.403.6022.012.02lines read a lookuptable bits a blockz 0z 0.5z 1z 1.5z 2offset for moved valuesoffset within 16 linesoffset for its overflow124,488 blocks, two seedslower and left is better

An offset that only has to reach its neighbours

A blocked Bloom filter's threshold table, its cache lines sized for the mean number of closed blocks plus one standard deviation and their excess values moved to a shared overflow, cost 3.38 bits a block where 3.25 was predicted, because every line carries a nineteen-bit offset into the overflow. Grouping lines, each line's offset reaching only its group's part and each group's position held once in an array of its own, was predicted to cost 3.31 bits a block for 2.0064 lines a lookup. It costs 3.301 for 2.0060, as predicted. But the nineteen bits were mostly an offset sized to address a table of moved values, when the overflow this table has needs eleven: sized for the overflow it has, the ungrouped line costs 3.337 for no extra line at all. Grouping's further three hundredths cost a line a moved lookup, and spent on room instead, that line buys more. At equal lines a lookup the grouped table is the dearer, by a hundredth to nine hundredths of a bit.

randomness · Randomness
0124816keys in each sorted run of the inputreads a question: words, or probes of the list48163264128256512sortedone word: the word that holds the first pairrun list, probestwo bits a pair, wordsbehind the filter, words1,024 keys, a pass firstsorted array cut at 24

A filter that reads the word it saves

A selection sort's record of adjacent order, two bits a neighbouring pair, costs 1.09 word reads a question and spends 201 of them for every comparison it saves on 1,024 keys in short runs, because it is asked everything and answers almost nothing. A filter bit beside each pair, set only where a run could start, was predicted to turn away three quarters of the questions and cut that price to under sixty. It turns away two thirds and cuts the price to 185. The questions it turns away were already refused in the first word, the filter is read in that same word, and one read a question is a floor no filter can go under.

counting · Count
level 0 · left585 keptlevel 1 · right+351 smallerlevel 2 · right+113 smallerlevel 3 · right+39 smallerlevel 4 · right+40 smallerpositions still in play, and the half the code leaves behindsmaller symbols before position 700: 543rank of "s": 42 — from the same 5 operationsσ 21 · code 011115 ranks, not 105

The count that was already there

A bit vector's rank of one is the position minus its rank of zero. Every walk down a wavelet tree computes one of them at every level, and this collection asked for the other separately for years.

machine · Symbol
keys sortedword reads for each comparison saved (log scale)141664256break-even of a pair table2561,0244,096runs of 4runs of 16runs of 64dashed: without registersa pass firstlogarithmic scale

A run end kept in a register

A selection sort's record of adjacent order spends about a word read on every question it is asked, and on short runs it is asked 184 questions for every comparison it saves, so no filter read in that word can make it pay. Every question starts from one of the sort's two current extremes, and what the record can say about all of them is one number: where the run from that extreme ends. Kept in a register beside each extreme and refreshed only when it changes, that number cuts the reading to a forty-fifth on 1,024 keys in runs of four, and the price of a saved comparison from 201 word reads to 4.5, where it stops growing with the input.

counting · Count
3.203.303.403.5022.012.02lines read a lookuptable bits a blockungrouped, offset fittedpooled, reserve for spillspooled, reserve as proposed124,488 blocks, groups of 64 lineswhole lines; two seeds

A reserve sized for the spill

A split threshold table gives every line the same room, the mean number of closed blocks plus some standard deviations. Giving each line room for the mean and each group of 64 lines a shared reserve at one standard deviation of the group's total was predicted to cost about 3.24 bits a block for 2.006 lines a lookup, under the best ungrouped line. The reserve it predicts holds 52 values where the group's lines spill 145: it is full in every group, the spills go on to a third line, and the table lands on the ungrouped curve. Sized for the spill instead, the reserve puts the table under that curve at every room, by two to three hundredths of a bit a block.

randomness · Randomness
acdefghijklmnopqrstuvwyzroot24 of 26 symbols present54 ranks · 51 nodes

A node costs two ranks

The left child's interval is the position minus the right child's. A descent that calls rank on both children returns exactly the same symbols at twice the cost, and nothing about the answer can see it.

machine · Symbol
3.203.303.403.5022.012.02lines read a lookuptable bits a blockungrouped, offset fittedreserve sized for spillsspills carried forward124,488 blocks, no reservewhole lines; two seeds

The room the lines lend

A blocked filter's threshold table gives each 512-bit line room for its closed blocks' values, and a group reserve sized for the spill had just put it under the ungrouped curve. A line under its room leaves slots empty that are already paid for, so its neighbours' spills could be carried forward into them, with no reserve at all: predicted at about 3.12 bits a block for 2.012 lines a lookup. The bits are right and the lines are not. At room for the mean a carried value passes 12.8 lines before it finds a slot, because a run of lines that is room-for-the-mean on average is a queue with nothing to spare. Given three quarters of a deviation of room, the walk falls under two lines and the carried table lands a hundredth of a bit under the reserve.

randomness · Randomness
keys in each sorted run of the inputwords read a question (log scale)0.111048163264128256512sortedregisterskept past a breakanswering from insidetwo bits a pair, plain1,024 keys, a pass firstlogarithmic scale

A register dropped by what it already knew

Two registers beside a two-ended selection sort's extremes cut the reading of its record of adjacent order to a forty-fifth on short runs, and made it worse than reading the record plainly on long ones: 53.5 words a question on a sorted array of 1,024 keys against 22.1. The swaps were blamed, and the proposed repair kept the part of a broken run beyond the break as a register of its own. It changes the reading by under 1% anywhere. On the sorted array the survivors are kept 523,775 times and asked 1,022 times, and the sort makes no swap at all: every one of the 263,167 relearning drops there is a pair the record already held, rewritten at the same value by a neighbour's question that the previous scan's chains answered. The swap never broke the register. Learning what it already knew did.

counting · Count
keys in each sorted run of the inputreads a question (log scale)0.111048163264128256512sortedregisterstwo bits a pair, plainrun list's searchkept through a relearning1,024 keys, a pass firstlogarithmic scale

A register kept through a confirmation

Two registers beside a two-ended selection sort's extremes, holding where the run of known order from each one ends, read 53.5 words a question on a sorted array of 1,024 keys, more than reading the record plainly — because 263,167 times a neighbour's question, answered by the previous scan's chains, rewrote a pair at the value it already held, and each rewrite dropped a register. Kept through such a confirmation and dropped only when a pair is forgotten or turns round, the registers read 0.347 words a question on that array, a 154th, and 0.345 on 4,096 keys: the reading stops growing with n. They become the cheapest record at every run length, 49 to 73 times under the next on runs and 5.75 times under the run list's search on the sorted array, and the price of a saved comparison now falls as runs lengthen, from 3.97 word reads at runs of four to 0.35. The dearest saving is now the short run's, and it is still above the 3.1 at which a table of compared pairs breaks even.

counting · Count
3.203.303.403.5022.022.04lines a lookupbits a blockungrouped linespill reservecapped at 1capped at 2capped at 4524,288 keys, two seedsdown and left is better

A walk that stops at two lines

A blocked filter's threshold table, its lines sized for the mean number of closed blocks and each line's surplus carried forward into the next lines' empty slots, was cheapest in bits — 3.113 a block — and dear in lines, 2.183 a lookup, because a carried value joins a queue with no slack and walks 12.8 lines. Capping the walk was predicted to keep most of the bits, about 3.13, for under 2.02 lines, two hundredths under a reserve sized for the spill. Capped at two lines, the walk sends 53% of its carried values to overflow, and the table costs 3.180 bits a block for 2.027 lines. That is a hundredth under the spill-sized reserve at the same lines and a few thousandths under the uncarried line's curve: at room for the mean most of what joins the queue would wait more than two lines, so the overflow becomes the reserve by another name. With room to spare, every cap loses to the reserve.

randomness · Randomness
05e+31e+41.5e+40246bits kept in the low partbits⌊log₂(n/m)⌋ = 2low partshigh vector2,049 marks in 16,385 positions1 bits between the two roundings

The flat bottom of a shallow curve

The low width is chosen as the floor of log of the universe over the count. Rounding it up instead costs one bit on five thousand, because the total is m·w plus n over two to the w and the minimum is where those two are equal.

bounds · Space
4,097 rows · one in 32 marked3.1% of the rows

The array that says where is twice the samples

An index keeps one suffix-array value in every thirty-two, and a bit vector over all n rows saying which. The vector is sixteen thousand bits and the values it points at are seven thousand — the index of the samples is twice the samples.

space · Space
plain bit vector19,475compressed blocks4,55723.4%Elias–Fano3,90520.1%positions, priced as Elias–Fano3,59118.4%16,385 rows · one in 32 markedElias-Fano at 20.1%

A position split in two

Write each sorted position as a high part and a low part. Store the low parts packed and the high parts as a bit vector in which the k-th one sits at position (p >> w) + k. A select on that vector and a low read recover any position.

structures · Space
01e+42e+43e+44e+450100one sampled position in every …bitsplain, one bit a rowcompressed blocksElias-Fano16,384 rowscrosses at one in 4

Where the sparse representation loses

At every row marked, Elias–Fano costs twice the plain vector. The crossing is at one row in four, which is a sampling rate a real index uses — so the choice between the two is a choice, not an improvement.

wrong · Space

Named alongside it

The objects these essays reach for when they reach for this one.

Index sizePredictionWavelet treeRankMeasurementSelf-indexBlocked filterCache lineComparison countDesign parameterNatural runSelection sort

All concepts