Concept

Burrows-wheeler — where it appears

The last column of a text's sorted rotations, a permutation that changes no symbol frequency and turns shared context into adjacency. Its runs are what a compressed structure reads, and its inverse walk must close into a single cycle for it to be the transform of anything.

Named by 4 essays across 3 fields — each of them below, with the objects they name alongside it.

10110100runs in the transform, rbitsthe structurelog₂ N(r)12 characters · 2 symbols · all 4,096 texts walkedgap 14.1x–92.0x

A floor under a run count

A structure whose size is a function of the number of runs in a transform must give a different bit string to every text with that many runs, so it needs at least the logarithm of how many such texts there are. That count is walked rather than estimated — all four thousand and ninety-six of them — and the representation everybody uses turns out to have five bits of slack.

floors · Repeat
1101001,00010010³position in the textLF stepsspan + sample = 64row sampling onlywith the secondsampling8,192 characters · sample one in 32 · span 32second sampling 3,598 bits

The sampling that goes the other way

An FM-index hands the text back, and the way it does it is to walk from the last character to the first. So thirty-two characters from the end cost thirty-three steps and thirty-two characters from the beginning cost eight thousand one hundred and ninety-two. The repair is a second array the same size as the first, indexed the other way round.

indexes · Index
1,00010,00010³10⁴bits · runs12481632characters in the collection · copies aboven·H₃, bitsr, runs in thetransformEnglish-like · base 512 · divergence 0n·H₃ x15.8 · r x1.00

The entropy that cannot see a copy

Two copies of a text have exactly the same symbol statistics as one, so every entropy on this site doubles when the second copy arrives and the second copy carries no information at all. The number of runs in the Burrows-Wheeler transform is 224 at two copies and 224 at thirty-two.

text · Repeat
1,00010,00010⁴10⁵characters in the collectionbitsFM-index, plainFM-index, compressedrun-length indexsample one in 64 · divergence 0 · r = 22411,900 bits at 32 copies

The index that stores the runs

A compressed self-index over thirty-two copies of a text is 30,557 bits, because its size follows an entropy that cannot see a copy. An index that stores the transform as its runs is 11,900 — and at a single copy it is the larger of the two, which is what makes the comparison a claim about repetition rather than about size.

indexes · Repeat

Named alongside it

The objects these essays reach for when they reach for this one.

MeasurementRepetitionRun-lengthSelf-indexCompressibilityFM-indexSpace overheadTrade offAlphabetConditional entropyContext modelCounterexample

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