Concept

Space overhead — where it appears

What a structure costs beyond the thing it is about — a directory beside a payload, a sampling beside a transform. It is routinely the majority of a succinct structure, and a total cannot show that, which is why every size here is reported in named parts.

Named by 30 essays across 8 fields — each of them below, with the objects they name alongside it.

1101001,00010010³position in the textLF stepsspan + sample = 64row sampling onlywith the secondsampling8,192 characters · sample one in 32 · span 32second sampling 3,598 bits

The sampling that goes the other way

An FM-index hands the text back, and the way it does it is to walk from the last character to the first. So thirty-two characters from the end cost thirty-three steps and thirty-two characters from the beginning cost eight thousand one hundred and ninety-two. The repair is a second array the same size as the first, indexed the other way round.

indexes · Index
1,00010,00010⁴10⁵characters in the collectionbitsFM-index, plainFM-index, compressedrun-length indexsample one in 64 · divergence 0 · r = 22411,900 bits at 32 copies

The index that stores the runs

A compressed self-index over thirty-two copies of a text is 30,557 bits, because its size follows an entropy that cannot see a copy. An index that stores the transform as its runs is 11,900 — and at a single copy it is the larger of the two, which is what makes the comparison a claim about repetition rather than about size.

indexes · Repeat
1,00010,00010³bits of select supportpositions inspected, worst casebinary search, no extra bits: 510L=8L=256L=8L=256one position per L onesdense and sparse6,554 ones in 65,536 positions · sub-blocks of 8worst cases, every k

Select is not rank backwards

Rank counts the ones before a position and select finds the position of the k-th one, and only the first has an obvious structure. The constant-time answer costs 1.56 bits per one, is bounded in a unit the machine does not charge for, and on a vector with one bit in fifty it inspects more positions than the binary search it replaced.

machine · Index
sampled positions6,99041%phi predecessor3,95223%run starts2,09712%run lengths per symbol1,97012%run heads1,5389%C table5003%English-like · n = 16,385 · r = 233the sampling is the two shaded rowsone unit = one bit17,047 bits · 1.04 bits/char

The sampling that follows the runs

A run-length index over thirty-two copies of one text spends 11,286 bits on its suffix-array sampling and 5,605 on the transform it was built to compress. Sample at the run boundaries instead and the sampling is 10,942 bits that stop moving — two values per run, and a function that fills in everything between them.

indexes · Repeat
sampled positions3,855grows with nsample marks2,056grows with nrun starts2,016grows with rrun lengths per symbol1,885grows with rrun heads1,563grows with rC table525grows with r11,900 bits in total16,384 characters · r = 224 · sample one in 6450% is the sampling

What is still proportional to n

An index whose size is a function of the run count still has an n in it, and at thirty-two copies of a text the n is half of it. Everything that stores the transform grew by 45 per cent; the two arrays that answer "where" grew by eighteen times, and neither of them has anything to do with repetition.

space · Repeat
1,00010,00010⁴bits12481632characters in the collection · copies aboveFM-index, compressedr-indexphrase indexEnglish-like · divergence 0z 156 · r 233

An index with z in its size

Over thirty-two copies of one text, an index built on the parse is 8,892 bits, the r-index is 17,047 and the entropy-bounded index is 34,615. Over eight thousand characters of four-symbol text the same three are 7,844, 25,177 and 20,413, and the smallest of the three has changed places twice.

indexes · Parse
0000200121200the parenthesis sequencethe minimum excess of each block of 213 blocks · lookup table 72 bits, sharedblock 2 · 24 parentheses13 blocks

The table that fits inside a block

A block of six parentheses has sixty-four possible shapes and twenty-eight questions can be asked about each, so all 1,792 answers fit in a table of 9,408 bits — computed once, shared by every structure of that block length, and never counted in any of their sizes.

machine · Range
0%25%50%75%100%0.30.40.50.60.70.80.850.90.95keys per slotconstructions that failed2 hashes, 1 slot3 hashes, 1 slot2 hashes, 2 slots2 hashes, 4 slots20 constructions a point, 256 bucketsa lookup reads hashes × slots, whatever the keys

More hashes or wider buckets

A cuckoo table with two hash functions and one slot per bucket cannot be built past about half full. Give it a third hash function and it builds to 0.92. Keep two hashes and give each bucket two slots and it builds to 0.89; four slots, past 0.95. Every shape keeps the worst-case lookup the plain table was built for, and every shape pays for its threshold in a different place.

randomness · Randomness
1,000248163264high-biased, α = 0.56low-biased, α = 0.56none-biased, α = 0.74tuples keptshards mergedlog-normal, σ = 1.2 — a latency distribution · 20,000 valuesα 0.56 / 0.56 / 0.74 · worst residual 6.5%

The cheap tail and the expensive merge

A summary whose tolerance tightens towards the tail keeps seven times the tuples of a plain one on a single pass, and after merging sixty-four shards it keeps three and a half times as many. The error function that buys a useful tail promise is also the one that pays most for never having the values in one place.

space · Rank
ε = 0.0515 → 29 (1.93×)ε = 0.0238 → 73 (1.92×)ε = 0.0177 → 136 (1.77×)ε = 0.005152 → 270 (1.78×)ε = 0.002397 → 674 (1.70×)reportedoccupied at the peak20,000 arrivals · lognormalpeak = resident + period, to 14%

The tuples a summary does not report

A Greenwald–Khanna summary at ε = 0.01 answers `tuples` with seventy-seven. Watched through the run it holds a hundred and thirty-six. The gap is the compression period, it is 1.70 to 1.93 times across every tolerance measured, and it is the number a deployment has to allocate.

space · Space
0.01%0.1%1%10%100%1,0002,0003,0004,0005,0006,0007,0008,000keys insertedabsent keys answered yesone filterm = 19,171, k = 7; dotted: the design sizedashed: the design rate

A filter past its design size

A Bloom filter sized for two thousand keys at one per cent answers yes to 15.6% of absent keys at four thousand and 68.1% at eight thousand. Nothing fails and nothing warns. A stack of filters that adds a tighter layer whenever the top one fills holds 2.0% at eight thousand, under a bound it can state in advance — in 2.9 times the bits of one filter sized for eight thousand from the start.

randomness · Randomness
1,00010,000248163264ε = 0.02, α = 0.58ε = 0.01, α = 0.56ε = 0.005, α = 0.54tuples keptshards mergedlog-normal, σ = 1.2 — a latency distribution · 20,000 valuesα 0.58 / 0.56 / 0.54 · worst residual 2.0%

The tuples a merge does not give back

A merge of thirty-two quantile summaries keeps seven times the tuples of one summary over the same values, and sixty-four keeps ten and a half. Fitted across the sweep the count goes as the shard number to the power 0.56, which answers what it converges to — it does not.

streaming · Rank
10,000110sampling, bitssteps per occurrence1 in 21 in 41 in 81 in 161 in 321 in 641 in 128r-indexEnglish-like · 16 copies · r = 233pattern " time "

Every occurrence at the same price

A regular sampling has one dial and it moves two costs together — 1,495 bits at 63 LF steps an occurrence, 131,088 bits at none. A sampling at the run boundaries sits at 10,244 bits and one predecessor query, which is a point the curve reaches only at 69,649.

space · Repeat
1,00010,00010phrases followed12481632characters in the collection · copies aboveworst depthmean depthEnglish-like · z = 156median 18 · 90th 31

The character that costs a chain

The index over thirty-two copies is 8,892 bits and does not grow. Producing one character of the text it indexes costs 17.89 phrase-follows on average and 38 in the worst case, against 2.38 and 7 at one copy — the size stopped growing and the price of reading it did not.

space · Parse
10010100occurrences of the patternvisitsone visit an occurrencethe chainthe answer8 documents · m = 610 queries at every point

The cost that is the size of the answer

Ten range-minimum queries answer the listing at every point of a sweep where the occurrences run from 30 to 790. They cost 256 to 288 node visits — and the scan they replace costs 30 to 790, so the output-sensitive method loses until about thirty occurrences per document.

bounds · Document
0.01%0.1%1%10%100%1,0003,0005,0007,0009,00011,00013,00015,000keys insertedabsent keys answered yesone Bloom filtera stack of Bloom filtersfingerprints, none reservedfingerprints, 3 reservedforecast 2,000, target 1.0%; dotted: the forecastdashed: the target rate

A filter that grows by moving a bit

A table of fingerprints can double in place, moving one stored bit of every fingerprint into its slot number, and so grow as one structure with one lookup where a stack of Bloom filters adds layers. Its false-positive rate is fixed by the fingerprint's length and not by the table, so with nothing reserved it doubles as the keys double — 0.69% at a forecast of 2,000, 5.7% at eight times that. Reserve three bits at the start and it holds 0.66% at eight times, in 294,912 bits, exactly what a table built for sixteen thousand keys would hold and fewer than the stack's 428,938. The reserve is a forecast of growth, and past it the rate climbs again.

randomness · Randomness
phrase table5,148 bitsboundary orders3,744 bitsintersection grid1,696 bitspropagation grid1,544 bitsz = 156 · ⌈log₂ z⌉ = 8 levels16,384 characters · 12,132 bitsgrids 26.7% · 20.8 bits a point

The structure paid for before the first query

The two grids that make a phrase index's search proportional to its answer are 3,240 bits on an 8,892-bit index — twenty-seven per cent of the whole structure, answering nothing on their own, and 38% of them is rank directory rather than payload — the lower-order term of the published bound, measured.

space · Grid
10010100occurrences of the patternreadsthe scanchain, treechain, succinct8 documents · answer 8crossing 267 → 75

Where a crossing moved to

The prediction was that a succinct range minimum would move the document listing's crossing "to a handful". It moves it from 32 occurrences per document to 11 — a factor of three, not an order of magnitude — because a constant-time query is ten lookups rather than one.

bounds · Range
124816nonephrasescap on the copy chainphrasesworst chainEnglish-like · 8,192 charactersz 156 to 7,351

The term that came back

A phrase index is worth building because 8,192 characters parse into 156 phrases. Cap the copy depth at one and the same text parses into 7,351 — ninety per cent of the characters — and the structure is proportional to the text again.

space · Parse
folded in one at a time2,616 tuples17 ranks outcombined pairwise, in a tree3,637 tuples17 ranks outfolded in, last shard first2,615 tuples17 ranks outtuples kept, and worst rank error against a promise of 10032 shards · ε = 0.01 · high-biased · round1.39× the space, 0 ranks of answer

The shape that moves the bill

Thirty-two quantile summaries combined pairwise keep 3,637 tuples and the same thirty-two folded in one at a time keep 2,616, for answers that differ by nothing at all. The counter tables measured for the same thing do the opposite — their order moves the answer and leaves the space alone.

structures · Rank
ranks to compute D72extensions removed27,906extensions remaining12,051one search · k = 3 · 4,000 charactersand one more index: 17,033 bits4,000 characters · m = 16388 extensions a rank

A bound that has to be paid for

The pruning removes seventy per cent of a search tree for seventy-two rank operations. It also needs an FM-index of the reversed text — 17,033 bits against the forward index's 17,032 — which doubles the structure whose small size was the entire argument for walking an index.

space · Distance
run together38,400 bitsσ 21 · 5 bitsone separator38,470 bitsσ 22 · 5 bitsa separator each46,164 bitsσ 35 · 6 bits15 documents of 512 charactersthe separators are the only differenceEnglish-like · 15 documents1.20x for the distinct marks

One separator, or one for each

A shared separator costs one alphabet symbol and is free. Fifteen distinct ones take the alphabet from twenty-two to thirty-five, which crosses a power of two, so every character of every document costs a sixth bit — 1.2 times the packed collection, to tell the boundaries apart.

space · Document
counter tablesworst error, ratio to bestquantile summariestuples kept, ratio to bestchain2.18× (323)1.10× (2,807)tree1.00× (148)1.26× (3,211)smallest-first1.24× (183)1.28× (3,278)largest-first2.72× (403)1.00× (2,556)32 shards · hashed · k = 32each column against its own best shape

The shape one structure will not fold

Folding thirty-two shards largest-pair-first keeps 2,556 quantile tuples against a balanced tree's 3,211 — a fifth of the space saved. The same fold on the counter tables beside them leaves 403 counts of error against the tree's 148. A deployment holding both cannot fold once and be right twice.

structures · Merge
parentheses131,07216.7%select support115,71214.8%superblock minima16,3982.1%superblock table80,97010.3%block minima147,46518.8%block tables291,25537.2%the partsbitstotal 782,872 · the segment tree 2,228,224shared lookup table 82,944, not counted65,536 values · openings in index order, found by select2.85x smaller

Two bits a value, and what undoes them

The parentheses of a range minimum over 65,536 values are 131,072 bits. Everything that makes them answerable is 651,800 more — five times the payload — and one encoding choice nobody quotes accounts for a sixth of it on its own.

space · Range
rank among the boundaries, sorted by the text before themsorted by the text after0 in the rectanglepattern "ss is un"split after 40 end with the left half0 begin with the rightEnglish-like · 2 copies of 512z = 156 · 0 crossing

A rectangle over a permutation

Two orderings of one set of boundaries are two permutations, so a phrase index's intersection is a rectangle over a permutation grid — the one point set a wavelet tree stores exactly, at one bit per point per level and no coordinates at all.

structures · Grid
one index35,3354.31 bits/charthe forward half35,3354.31 bits/charthe reverse half35,3354.31 bits/charboth, which is the structure70,6708.63 bits/charbits8,192 characters · sample 322.00x one index

The structure that was supposed to halve

A bidirectional index holds the transform of the text and the transform of its reversal — 35,335 bits each, 70,670 together, exactly twice one index. The deferral that named it hoped it would stop the index doubling. It does not remove the doubling; it reuses it.

space · Distance
50318223749516674879310811positionthe minimum12 values · depth 3answer 6 (1)

The shape a range question is about

A range minimum is a question about a tree, and the tree is determined by the array. Twelve values, eleven parent links, and the answer to every one of the seventy-eight ranges is a lowest common ancestor — with the values themselves no longer needed.

structures · Range
00.2500.5000.750101234567891011level of the wavelet treebits a bitthe parse's grida uniform permutation3,612 points · 12 levels0.997 bits a bit

A bit for every bit

A grid over 3,612 points is 43,344 bits of payload. The smallest any structure can be that distinguishes one permutation of 3,612 things from another is 37,485. There is 16% to play for, and the deferral that asked for a compressed grid assumed there was much more.

space · Grid
024601234567891011level of the wavelet treemean runthe parse's grida uniform permutationbreak-even3,612 points · 12 levels1.23x chance

The runs a permutation does not leave

A run of length L costs 2⌊log₂ L⌋ + 1 bits and replaces L, so coding runs pays above a mean run of six. This grid's mean run is 2.34, chance gives 1.90, and coding its runs makes it 17.8% larger.

structures · Grid
English-like, 32 copies0.05x0.017 runs/charEnglish-like, 8 copies0.12x0.045 runs/chara text that repeats itself0.08x0.029 runs/charEnglish-like0.80x0.292 runs/charfour symbols, uniform2.07x0.753 runs/charthe whole suffix arraysampling bits, run boundaries / every valuen = 8,192

A sampling that costs more than the array

On four-symbol text the transform has 0.75 runs a character, so a sampling of two suffix-array values per run is one and a half values per position — 271,565 bits against the 131,088 that keeping every value costs. The structure built to remove a term proportional to the text is twice the thing it replaced.

wrong · Repeat

Named alongside it

The objects these essays reach for when they reach for this one.

Trade offMeasurementIndex sizeSelf-indexFM-indexConstant factorRepetitionLocateRun-lengthSamplingWavelet treeBit vector

All concepts