Fitting — where it appears
Named by 7 essays across 5 fields — each of them below, with the objects they name alongside it.
The entropy that cannot see a copy
Two copies of a text have exactly the same symbol statistics as one, so every entropy on this site doubles when the second copy arrives and the second copy carries no information at all. The number of runs in the Burrows-Wheeler transform is 224 at two copies and 224 at thirty-two.
The matrix a corpus wrote
A substitution matrix is not a property of an alphabet. Fit one to four hundred pairs of sequences that rarely change and the dearest substitution costs five; fit the same model to four hundred pairs that often change and it costs two. Two hundred test pairs aligned under each matrix give different alignments in 115 cases — and a matrix fitted to eight pairs of the first kind moves 79 of them, from sampling alone.
What a second pass buys
Exact selection of a median from thirty-two thousand values needs the whole stream in one pass — a million bits — and eleven thousand in two. By nine passes it is three hundred and twenty. The state falls as n to the power one over p, which is a law with an exponent worth fitting, and on skewed data the deterministic rule misses it by three orders of magnitude.
The ties a rounded matrix makes
Measure how far each optimal alignment is from a tie — the smallest change to any one cost that makes another alignment win — and it predicts which alignments a refitted substitution matrix will move. A resample of the same corpus moves 30 of the 63 test alignments that sit on a tie and 3 of the other 137. A matrix fitted to a different divergence moves alignments far from a tie as well, and the prediction weakens to a chance of 0.62. And a third of the alignments were on a tie only because the matrix was rounded to whole bits — fitted without rounding, 15 of 200 are, and every prediction improves.
A floor with two variables in it
Under round-robin a Space-Saving summary's floor is 0.0203·n^1.018 over a hundred-and-twenty-eight-fold range of shard size, worst residual 2.7%. Under hashing the same measurement has no exponent at all — the local slope runs from n^5.17 to n^1.19 — and a least-squares line through it reports n^1.73 at a 441% residual.
The filter that proposes everything
Seed-and-extend saves two thousand times the work at zero errors and costs more than doing nothing at four. Between them the selectivity falls through the floor, and where it falls is set by two numbers that can be computed before the filter is run — one of which does not contain the length of the text at all.
The lattice that decides the ties
Rounding a fitted substitution matrix to whole bits puts 63 of 200 alignments on a tie where the exact fit puts 15. Rounding to half bits — a finer grain, and the obvious repair — puts 79. What tracks the ties is not how fine the lattice is but how many of the six fitted costs it keeps apart: whole and half bits both leave three, an eighth of a bit leaves all six, and matches the exact fit exactly.
Named alongside it
The objects these essays reach for when they reach for this one.
Honest limitMeasurementAlignmentCorpusCost modelEstimatorParameter choiceSubstitution matrixAlphabetEdit distanceOptimalityRounding